Scaffold Ga0182024_10000039

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10000039
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 221085
• Total Scaffold Genes: 197
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 107 (54.31%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000372	Metagenome / Metatranscriptome	1220	Y
F000633	Metagenome / Metatranscriptome	971	Y
F003216	Metagenome / Metatranscriptome	500	Y
F005085	Metagenome / Metatranscriptome	412	Y
F009018	Metagenome / Metatranscriptome	324	Y
F012097	Metagenome / Metatranscriptome	283	Y
F072176	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_10000039116	F000633	N/A	MIITGENGGSELRFEVNGQMFFVNFVPEEGRWYCFAPTATGVQRIPVSMDAAPFEAFTVDVDEQAKEVVN*
Ga0182024_10000039119	F072176	GAGG	MTPIFRKMSAHVNERGIVLRFNGPSNLSHDEWERLLDDLRSHYIPSFYQYEKRLHVDVSAEGQMRAVIYFTPQTVSMDEAIAILKKWNIEVFDVREKPAGL*
Ga0182024_10000039134	F012097	AGGTGG	VNSLREVIVENPTIAEPETVTPIGVRSQRETLSPMALLHEEQIHALIQQLFFGRETTPVRHVGFSTMETTTEIATLCFEIATALAQEDRYDVGLIDAQPDAVSLQTQLGLPSPNRAEGTWPIAPRLWMVPRQSWLPDASGTRITDQDLSRLRERTTEFDFSILCCAPVSWITTSIGQACDGLVLVLTANKTRRLVATQIKDQLAKAQVPLLGTVLAERRFPVPQGLYRSL*
Ga0182024_10000039139	F000372	AGGAG	VTGAEPSAPSQSKVARRWTVIASGLLLLALALVVIYTAPNAFYSPVALVTVAAIGLAALLLQVWFRLDLPNIHSPLWLNVLGIMCALLSLFANNLRMNARMLELVAFTAVICFGISGSLILRALRRRVPAPPSTATE*
Ga0182024_10000039149	F005085	GGAG	MEKHLDSVPDHEVSREEITSVMTALEPDQLIFAKEHHHCPRRQLTPTEMVIFWALRIYLVFMVGVVVYQIWTGVR*
Ga0182024_10000039152	F009018	GGAGG	MTRNIRRFIAAVLPIVAFALTSSAGMAQSYSGNWPMTVTKARQFNGTYCVTLTDDGSYGWPHSGEAELDGQNDPYPGYFTVIDGLITVTFPEPSGPGDCCSFLLFTARASDGHIGKGVFNYAGDVDYGVLAVGKNGGC*
Ga0182024_1000003992	F003216	N/A	MTLKTAALLALVGTTLITALLLWTFVFNLINVLRDLVPPVALFSSFIEAFGCFTVALFFYMFHKSQ*