Scaffold Ga0182019_10149459

Overview

Basic Information

• Taxon OID: 3300014498
• Scaffold ID: Ga0182019_10149459
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1478
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002216	Metagenome / Metatranscriptome	582	Y
F036350	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182019_101494591	F036350	N/A	MLNNATESSRACGRAGVIPPFLWFRARPKRPRSGVLDQATLALVPLNLDGYPTPQDPVQRLVSIDVKSGVEKQLATLDPPPDSILAGRISLHPDGNRLAVSFVRQHGKIYMLEGFDESTSWFDRLMRRF*
Ga0182019_101494592	F002216	GGAGG	VLKTTWKTEYKGHVIELENRISLERLIVDGKEIAREPGATWEPRSFQATIPDGNRSMKVDANTRFSKSPRGLRFTVSVDGKEIYSEVKWPPRWYLPFAAVGLILASVVLRLVS*