NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182019_10004428

Scaffold Ga0182019_10004428


Overview

Basic Information
Taxon OID3300014498 Open in IMG/M
Scaffold IDGa0182019_10004428 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7237
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F013349Metagenome / Metatranscriptome272Y
F014888Metagenome / Metatranscriptome259Y
F025325Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0182019_100044282F014888AGGAGMNKVLEVLLTVVALAGLYSAIPTSTWRPGNSAIRAEQAVVVADGSDPMPLCRARRCGQ*
Ga0182019_100044284F003832N/AMKSTAKQPRSEANWPPEEGELVSFKTSTGSETAILKEVHWGLVWRDFILEDGRVIPEHRISGCPQRRVWRKIDEVADNEREECEERLLSMAGCGMDPRKRDQSFWAELNQYLAYTYLRFKQAECKVQDTERRRIDRE*
Ga0182019_100044285F005268AGAAGVNRTRFRAVSRSDEETEEQQVWRVLSEAGLVEIRLDEFAERIRDVKRIVIVRLRELLDFDTGIKERESAAYSLGTLKGLELKVLANAPEPPDPSEM*
Ga0182019_100044286F025325GAGGMLSDGPKRLKKTWEELAAAASMEADPEKLATIMEEIFAALEERERAQSLSQNPSGFQEHSRET*
Ga0182019_100044287F013349AGGGGGMRTYRALLCLAVVGVLEVAALAAPFVVFPSAGQLLSPDGRFLVRNTDRDAPLSEFAGNFHSLFLEETHSGHSRKLFDYIGAVAVGWANNDFIIVTEYVSKHTSRALVFAADGSHDAVVIDKPLLTSLVPDNLRPQLRENDHVFVEATRVEGETLTLRVWGYGTHDANGFRWRCEYSLREGGISCEKPTSP*
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