NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182011_10063345

Scaffold Ga0182011_10063345


Overview

Basic Information
Taxon OID3300014496 Open in IMG/M
Scaffold IDGa0182011_10063345 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2604
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037652Metagenome / Metatranscriptome167N
F080330Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0182011_100633452F080330AGGVKTSVHFILSLFAAATVLAGDPFQGKDVSQAALADGVRLSARIVQDVYLMPEQITKLIFPKPVDEVSVNTQIINIGRNPPDSKECYLLLSPKVAKGDVDMHIVMEGKTYTFRLIVGREQVNYRKTFTAEGGGPGRNLRHVPPLAPTEINTTRLIHIINQSMRDPNYASVVAKDIGSSPQGVTYLWDGAEVVLQSAWHYYPQDVVILQVEVHNPGSRAIYLSATQMEPYIANTTFHYLLTQQGAKVLLPGQTDIKYLFLQGYGIDIEGARFELRLPAAGTQLNAHPQQDP*
Ga0182011_100633453F037652GGAMDPIPYTHFWSEEPEAQRRAWRPTDEVRRRLMRLWMIQALLLVAIVVVGALLAKESKRMPPIYARLPNGVVFETTAGDLQMDRLARTELVNNVLQILYYQEGSFNYLETVRQNVKPQLLGRFRAEMQDASKQTNSTVYLNVVETFEAVNVPAKGFDAVTKGLLSKRSSLESATAPIYVRTRWLRSGDRYLLSRVEEIRPGDYYELFLAEKERLKKLSKPELERELGVRKNQEIPLPNRNRLF*
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