Scaffold Ga0182011_10056621

Overview

Basic Information

• Taxon OID: 3300014496
• Scaffold ID: Ga0182011_10056621
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2769
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023510	Metagenome	209	N
F071899	Metagenome	121	N
F104335	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182011_100566211	F023510	GGA	MVKPIDPWPVPGPNSHIFFKVSAVNPNHYGTPPATFIVEAVNEEAATECVKRAIRMGILLPHGCDGALSPWPTYFQSNALRYLLDGMFIAEEMGTMPTLRFFPDPCIRDEWLRYQLSWRARLVEDLQKWWSAVKARSFFTSWFGR*
Ga0182011_100566215	F104335	GAGG	MAFWEVFGTAVTEDNNAVTFRTFVPAEELVDTVNEALDAIFEIENPEIYDEPETTTNGCFAMAQGLAAVEPPPAVNVHVEVHV*
Ga0182011_100566216	F071899	GAGG	MQARVKLTPRIIARLIVGKPVTVNLPAGTSSLSLVSDGKFHEFLRAFSAPEEFEPETPRTEVIGLFDLIFGRH*