Scaffold Ga0182011_10007461

Overview

Basic Information

• Taxon OID: 3300014496
• Scaffold ID: Ga0182011_10007461
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8399
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040984	Metagenome	160	N
F046150	Metagenome	151	N
F053027	Metagenome	141	N
F057847	Metagenome	135	N
F059592	Metagenome	133	N
F102366	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182011_1000746110	F102366	GAG	MMMVLSHIYMPVSDVARFEVSFTGNSDCFVARLDFPAHRGGGYQVFEGILGYKVSPSSPVMGKNRVTPRFPLRPTIPPQTAEDLKEEERQLRLRLDYGETFNNDRVS*
Ga0182011_100074614	F040984	AGGAG	MSTRHYKVEFDPTFFGGDYTGQGNQALIPEQLVEEVGMSAAFLKTTGHNPANIVHYAEDLRFNTDGTLCTDEPAIDTATDSTVELTTAGTVHLPANEPVQLPEPTAIEISDPPTPIETESRDVPRLSKRKQAA*
Ga0182011_100074616	F053027	AGAAG	MLLTERQVDLRLKCPMFGMEDKHDPSSYECAQKLLRWAILNAFKGRLAPVATLRGKFESIWNGHTAGWAPDHQPAYYAGLRAGNTAARKIFLFLQHYEVLKPVEAYGVDLAGDRIEGEYAVVLRRHDRRTDERPMILQVHEWRPAYCQQPGAIELIRYVHLMGATDYTSPGVYHLPLFRGEPWKIKDFDLPLVRNAVASILNAVRNTDHPVPGSHCEDCSGKSCRSLAHA*
Ga0182011_100074617	F057847	AGGAG	MPETLPIFMKGERKPVNCFRDAEGFLVIDAVLGDDDLTVVSPDSGEERFRITDGEVTDLRPHKHEWDVDSHCTVCHKSKQQINEEQDEQTHPTAVE*
Ga0182011_100074618	F046150	AGG	MYTTSGAGYRNVNQGPQKVYLCPCGEIMIPPNYASGVPAGSERDLFVQSLKLAIARRNSTTLDQVAQGTVSLAEHNKLKAQFEELAGRFNTWAGGGEMPEPVELSTEGDEETHEQEPAHAPLQLTMRELAAKPPIATGTQGRSAASAVQSIGDHKEVTSTPAPIYTGGARERMKRQGGQ*
Ga0182011_100074619	F059592	N/A	VNVEFLAGLELVSNKVFPLPGGVGRRQNPTAYDPRLTHLSGLTPVGEEVIYYEHIATVRHKATNQFFVAFKETMDAFLARSTDLQKYPEWLMKQPNKQAEREVHIYLVTRTPQSVPIMRSHEDWLAHIADIGTFDTLAYFLAKNDVIDEKALATLR*