Scaffold Ga0182011

Basic Information
Taxon OID	3300014496 Open in IMG/M
Scaffold ID	Ga0182011_10000626 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014496 Open in IMG/M

Scaffold ID

Ga0182011_10000626 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30900
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (80.77%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

30900

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (80.77%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030957	Metagenome	183	N
F042703	Metagenome / Metatranscriptome	157	N
F094792	Metagenome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0182011_1000062612	F030957	GAG	MNTSTQIQPVNSLTYADAVGLNVGLTRMQGEDSVAFLERCYLSTTCRQDSTYEGEQDQVCLQLGLSQWAGISISSTDSSMTITVCIGLVTVVQNGVTHTIPTVTMAPDDYWVWRMISDVVNDLNVITGVTAVLAGPDGPALQIAKQSNLFTVPSEAITMTDQLLANPNVIASSLTFSLAPGSYVFNPQTGELIFSGTLPPGLSVAYQYIAMPYNLVCSELGLFGLVEPSLARVGVSSDNVLAYQLREVVQAVMNADPSYWAQ*
Ga0182011_1000062617	F042703	GAG	MKPDTSTPNPVHLAIVSPCSSCQNQLTVSQNGMPACPRRVAQQNIQYMQSVGIDTTGVQHLALYGTEGTSQAGNGSYLNPVYSDNLHAILIWIALLEDNGGVLDSQGNELCPNLLDPSFNTSYIQCHSLPVTTRDNEAVYFQKGAFAANDQLEVTLSARQQMSTDGSALPVLIDGFAQKVNFIFNHPRTPLSKDLCPAGT*
Ga0182011_100006269	F094792	GGAG	MPPIGIQTFYYGKKLPARAIAIAQVTAEDVSPADLIDIVNTPYLPGSLGIWTLTSGLAASPNFTAPDYNQSVTITGDIAYLVQNQFFQITSQFAADGVTPLYFYHNFGQSVSGATILNLDGSVFTPAPTVLFNGNYMYHDVPSTAPYQVRYVDSAGRVQISLLHYNQVMPLSTNGDTSKGYAFMGGVIEVASNTASYAIRFLTQNGYQVLPPYEAPSYLPWFPRVRFSLQPPALEYPIQSFLPTRPYLLGYWIPGTVLGPNLIQFDRPQIYNDPNHLPDIVVFDSNQNVKYAMDGSANGEPETHGTLYPWKRNQISDVDPFMGRVEVVPTVDTTDTVYGFYSYFEPDVVYTALDVNPVTNPSIKNTVICFYYRAASNPLQEIYHQVFNETGPIAGMTNDPNPPTWTGQVPSSGTVIAEMVVGVSFGIATFEMTDARTRGGGLAPAYQTIPQADNFWDLGYLDGRPYPVGGALVVYLPTRILNTMTHAVVAGIVNSVLPMGTIAAIRYYDPEGNESV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182011_10000626

Overview

Ecosystem & Geography

Associated Families

Sequences