Scaffold Ga0182015_10047270

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10047270
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3172
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043255	Metagenome	156	Y
F062584	Metagenome / Metatranscriptome	130	N
F074603	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_100472703	F074603	GAGG	MLQFPAPLPPGEIPPLTCFEQFILCVALVAISTALLSFFLPRPLFCKLFKIAFPFMPERLEDFDEKD*
Ga0182015_100472704	F043255	GGAGG	MKKTKKPKAVMVGNTPITPVSAKEQREIKKRIEKRHEQLRRRYPEVHGKVVDFINHTVSDGTLYFSVRFKDKTNFSARYCCGMFVVGADISDMSAGDLEIIREYMKPIPH*
Ga0182015_100472706	F062584	GGAG	MTEIDDPEVLRREIRTMLEKVTDRGSLIFFQWMVRRILANYPIPGDEQLRALHQAFIRMHAAFRAKKRPTKEDMELVAKWTEGDAESMGRALGRAVKFFREKRGMSRLQLAKKARLPIRAILAIERGRVFDLSPVIDNLTLGLCVEAGELTGKLLDFEKDDKSPTRKE*