Scaffold Ga0182015_10039267

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10039267
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3557
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F044385	Metagenome	154	Y
F098478	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_100392672	F098478	GGAGG	MTKAKNGKAVDVKKAAAGDKPDTNGNGKSEKAKDVKIQTFTPANTKLVKRGFVKMFVDFVVKRGSVTTDDLTAEFAGRQVEGKKITKQRVLRYAHWCVNKGVLKGR*
Ga0182015_100392673	F044385	GGAGG	MLIRNNNGEVVGEMNTSITQDGTVIRTNTMYQNGRPVTQNISVRDSQGSVRTTNVIGGKILP*
Ga0182015_100392674	F006757	N/A	MRNLAVLPPIKGKVQMALLYLTAFQEISTDELIAMAQAVPGGTKVLIADRITAIVLLLGTQPVDSD*