Scaffold Ga0182015_10008213

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10008213
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9989
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001485	Metagenome / Metatranscriptome	686	Y
F001893	Metagenome / Metatranscriptome	621	Y
F043068	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_1000821310	F001485	N/A	MEKKIFWMVFMVLGLLADFLLPIWWGLVSTIPIVFIAWWVAYRSDWF*
Ga0182015_100082133	F001893	N/A	MGMIKALLALLAVVAVVICLFQVVPPMMSNYGFQDDLKMVAMTDSSIMQKTDDDVRNDVMRKVKEHDLPIDPKQITVQRINTPGISAIYITANYSVNVNLPGYSFDMHFTPDSGNKGF*
Ga0182015_100082135	F043068	AGGA	MSTRSSIWLGESEGRWVHIYWELAERKIEDGKMMRVPIYMAVDSGNDEQEVSIRLPKEIAMRLLMSLSPNWTGEIGQVL*