Scaffold Ga0182015

Basic Information
Taxon OID	3300014495 Open in IMG/M
Scaffold ID	Ga0182015_10006129 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014495 Open in IMG/M

Scaffold ID

Ga0182015_10006129 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12182
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12182

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036809	Metagenome	169	Y
F044611	Metagenome	154	Y
F052071	Metagenome	143	Y
F057539	Metagenome / Metatranscriptome	136	Y
F077551	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_100061292	F036809	GAG	MASLQKTTTPAKVCILNEDDARSLTYGGIAHKCSSRRHHHYSKSKVDTLVKTGELVWLGKHKKVATFRNARSWIKTYTRNRYGEVITCGMQLVRGGGGF*
Ga0182015_100061294	F077551	GAGG	VTTDEPSPSEFLISKMEGMDDVTQVLIVTRTGDGEICYDSCGQIAADTLGMIEFVRVAAAEHLRRELYGEDED*
Ga0182015_100061296	F044611	N/A	MNVYEAIFAEAHDAGDVRHAIARAVRQLREALEKEDNCAVTAAHVRNLAEIAPEALAMAYAAAEKSCTFWPTPGQIRELAGWSEESRGRDALQWVFRYLTLHGVDGRAYGGGVHFGEDESGRRVLLATAPVVAAPGLPAAIDATLASLGNGSAKHGLRYVSQHPVVQGWDSFTGTSKTAERIEGDWIRCYRHTMRNFHHPPLRRTE*
Ga0182015_100061297	F057539	N/A	MEHSHWLERTLVELGKLALSRQLSLTPECLLLMAQDLGDVPWDCLEAVITGWRRGTLRMGKPEQMDRFPTVRQLRLQAELFRLEGRSHSQT*
Ga0182015_100061299	F052071	AGGA	MKTEQTRRCQLIEGLRAVAAFYENNPSAWYDGMHLTLNMYVWGASARKVLSDTARAFGECRKTYDESNVTVSRQFSDQVTLAVFAPRARVCRRVVLGARILPAKIVPATQELTIPAARVEIVEWRCDPLFDRAAG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182015_10006129

Overview

Ecosystem & Geography

Associated Families

Sequences