Scaffold Ga0182015_10001814

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10001814
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27220
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (36.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001265	Metagenome / Metatranscriptome	735	Y
F014318	Metagenome / Metatranscriptome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_100018141	F014318	N/A	EDIQFRKKWAEQCGFGFELASVVPSVPKCTENVEAAVAT*
Ga0182015_100018144	F001265	N/A	MVRVTEDLRAIQRELNCAAMQAPSDPELMEALSALPETEAIQVLCKSLDQMRHFLWFYTQVMSNDPELGDKLRQSNASHNVGDGNVDTSFLGKLTRADEAVLLRYLADAKERKPN*