Scaffold Ga0182015_10001688

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10001688
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28578
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000151	Metagenome / Metatranscriptome	1897	Y
F000174	Metagenome / Metatranscriptome	1764	Y
F004611	Metagenome / Metatranscriptome	431	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_1000168817	F004611	AGGA	VPENEPNSRRWTVIASALLCGGLGLVVIYTKRSAFFSPLAVVVVAAIGLAAVLLQLRYYNREHSDPIHAPVWLNLVGVLFALIALFSDLLGLSWQTAELMALGAVGTFAISSAMILHAFRKHRTMSK*
Ga0182015_1000168819	F000174	GAGG	MKNVYEVLRQKELELARLEKEVEALRVAAPLLSDDKDSGVEASSNKPTLATTPNPQQPIRIPQAAVNASPQTARAAGWEDTAKRWP*
Ga0182015_1000168820	F000151	GGAGG	MQYEVSGSNGTGVETITRNGDPHVQEVVKTAHEELRHLMHQRAEIMKRIGTLKQTISGLANLFGDDILGEDLLELVDRKTGGRQPGFTKACRMALMEAGRPLAVREVCEQIQRRLPAVLLRHKDPMASVTTVLNRLVEYGEASSMVRDNGRRAWQWVSDPMAAEERGQVSAPVSQL*