Scaffold Ga0182015_10001153

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10001153
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36023
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021139	Metagenome / Metatranscriptome	220	Y
F026322	Metagenome / Metatranscriptome	198	Y
F042611	Metagenome	158	N
F049116	Metagenome / Metatranscriptome	147	N
F052724	Metagenome	142	Y
F060142	Metagenome	133	Y
F069068	Metagenome	124	Y
F069114	Metagenome / Metatranscriptome	124	Y
F089494	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_100011531	F069114	GGA	MADDRSTLGFGEEARLLEKILSPAEAQSLVLPPPDHPPVSGPGESTPLTGNLARPPSQAVPSRSGLAGYFAASAAPLRQSAQDAAPTDRSSDPQYVKVSSQGQVGYLPKASLPAALKIDRNLKVLDKG*
Ga0182015_1000115310	F042611	GGCGG	MSHIVPTAAQRFLTTYGGRTPFGKPHWRLMVASDRLVKESGVYRDWAPGLSTAEKGGLNFQANPDAPGCNYSRHDNRPLRVVTEMREVKKYPHAEGWILEKWFPASSYGTQAEWYSYKAIDGFTPMLGPYPESGDYEMVFGPWLKLPTTDTLQNLIAKYSAGINSRRGSPESRAQEYLLRYQYEEEQAEAKRKTEYDAMMRDHISPLHSSSLAASRWRQDLARRTGNGNEHIGIL*
Ga0182015_1000115315	F052724	N/A	MMGLLTAQVTALTLERKVLLDRLATLGLGGPLFSSVALPEASTEAVAEIDAEAEELERLMSLRRRPSKLADALTRKAYRDYNKVQAGPSVRWIPKADSIAAALDEAEAAGKKQA*
Ga0182015_1000115317	F069068	AGGA	MAHTRLITLNGSGGAFVAVSATTVTRRVEIIEDGSANGGTGQGLSYQFNDGSATPFTTTYTIEPQSEPIVLGTPVPQGAGFGMVIGTPPDNSGGYALAATLLINLRSASTNTTIVRVTELD*
Ga0182015_1000115325	F089494	N/A	LTPPQEKAASASALQAQILEQLTELKSKVEESLQQGRENGNELKMLRRELGLDGQHGRLPIVEATLIRHELRMEKTDARVDGLEIDKNEANGKAKLVVTLVALMGGGAGGTVIALLAHLMGPR*
Ga0182015_100011533	F021139	N/A	MNRIILRQAIPEDWPAIQQIHRQHQAAQGTNYELPNLFGRAIAIALVGIDEGGIIRNCIYVETIAEMRFVGCDPKATAFGRREIAGLGYVLKLQGFRWLECFVPRPLKRMIEKPLRRAGFACVDRELAHFTKDLRGTA*
Ga0182015_100011534	F026322	AGG	MYSVHQQYLDMAAGFHVIELRDEKGNRHLVQLAVGHDACPACGAVHPKDNLESLDPVAAVSQISQALNTSQQQMHAYAAKHGLAVK*
Ga0182015_100011537	F060142	AGGAG	MAVTGAIIDYTGAAGERNFTVFIQLTFSGSFTSGGDPLNLATLSNPNGLDVEGVFELPLSLAPAVYLEDIGGYYVQPKVAGSTLNAFLINVYQPSGTIVSGAYATAVTTGNVVLTMQKRRV*
Ga0182015_100011538	F049116	AGG	VSWTLGQVKARVRNLLDDPQGSYLTDSFLVPLICEVYDDANSQLASTQSSWDIAVVEVPGIAPGTPNLAPYQTGSGPLADLTDQPLRIDWKPAGDDPSYYRLVRNYEVLPDLQPREGMAGWEYRSEVIWLTNSSIAVDLRIRGEFGPPALTSDDSVLLSHPRIGYVVAYGTAALVATVRGNDAWTRQYEQKAVEGMDEIMEQLVRAEQGQVRRTARQTGRHRA*