Scaffold Ga0182015_10000287

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10000287
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72824
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (51.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000159	Metagenome / Metatranscriptome	1863	Y
F075265	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_1000028744	F000159	GGAG	MKVRSLLRSAALLAALTTAAIPAFSKPISKTINIPQNAKVGKADLQAGDYRLTIDGNKATVMKNRTTVAESEGRWEDRSDRSRYDAVVFGQNGEVKEVRFSGQTRVFIFNE*
Ga0182015_1000028764	F075265	GAGG	MFAAMLFAISTVAISQFGMYYWRAVLASVASQPVSESVLAAVSAENRPLRAADFTQFAGLHELTPDLNPRGNGLGLVRFYYGIIRAVDMLVGARIPVVAQWSEREGAICARYAAVQVDQRLQGNLELAAALRSC*