Scaffold Ga0182015_10000048

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10000048
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 152645
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (66.40%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006633	Metagenome / Metatranscriptome	368	Y
F045227	Metagenome / Metatranscriptome	153	Y
F092634	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_10000048100	F006633	N/A	MGPYRALAQLIYAASQKGDNATAAKLARILERTWDKAEDYGGETALSKTNHAIFDQIDKAMDHFIGQLVAHPSASPDAAAVKAAYNGYLEILKQAD*
Ga0182015_1000004869	F092634	GGAG	MADNGNEGSFVIVWAGENPSVHMNLLEKLEANGIAYNDKVLGDDEVAPTSDPLPIDWKPRFGFEVTVLSNDYPAARELLDKLLDQEPENLEIPAQPEVVDPASFTPKANDAPAELEVWRGTDVKLAQFLTSALSENNLVTRVAAKAGATVIYVAQGNEARAREIVREVTQGAPPK*
Ga0182015_1000004885	F045227	AGGA	MMKTRMAPVAVLLGTLFFAGSLPAQTNANTGALQLSARITPTAARPEPVRQFTFYILTKSYADVAQEVASGDEVPPRDKFIDDLKVSPELKEWLKAHDVMDLTTPSLDKALTADDVLHVPEFLLAYQRSNSGGVTNGIPKPKYKDADKDDNPDRYKKQKDEYYAALRKFIRSHPETMSGMELELDGVNPQRKWEQIANDHKKHIQHLAPDVAQTKYLVAKADTDLDGHAGVSGLPPGSYWISSLNLDADAGDTRVRWDVPVSIQPGQTTRIELTNLNATDTRAAASKP*