Scaffold Ga0182015

Basic Information
Taxon OID	3300014495 Open in IMG/M
Scaffold ID	Ga0182015_10000013 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014495 Open in IMG/M

Scaffold ID

Ga0182015_10000013 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	220744
Total Scaffold Genes	212 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	139 (65.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

220744

Total Scaffold Genes

212 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

139 (65.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000238	Metagenome / Metatranscriptome	1494	Y
F000359	Metagenome / Metatranscriptome	1236	Y
F000912	Metagenome / Metatranscriptome	839	Y
F006274	Metagenome / Metatranscriptome	377	Y
F069867	Metagenome	123	Y
F084562	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_10000013150	F069867	GGAGG	MPQKIHEYPEVIGKTVAKVTVTNESDWRNITVKFTDNTAIHFGIRPFIQIEPEHLDWSTGNGKVLRSYPFVHEKEG*
Ga0182015_10000013153	F084562	AGGAG	MKKQSTTDAKRAAANDKPENGKAEKAKKVSKPTEPDAKFTLGSIDTVKRGFLLEFVKFVKAKGTVDAAMLIAEFAGRQIDGHKIDAARVHRYIRYCVNNGQFKVAK*
Ga0182015_1000001328	F006274	GAG	VLDVRRQNDSTHHHQRHGIYATEISGLLLIAFMLLILTVIRYWRVIHWSLR*
Ga0182015_1000001339	F000912	GGA	MSLDAFVRCTCIRDGKAKPHPLPDRLTFDEAGEPMLTGDPTDDEWEAHDQWLTDSCEHGGYVLSMFLGNITRVGNLRSFLRALQGSPGPKFPILLEEVLYDGTHTGDWIPIKESPALLKEVDTVLHSSDILAESEKEFFTNMKLLCEASIATGNPIMF*
Ga0182015_1000001345	F000359	GGAG	MSGQVILYFEDQADALRFALAAGSVMAGDRASVTDDLIQETARVSRIRLDAANAGKTRKVTPEQAA*
Ga0182015_1000001395	F000238	GGA	MPPTSHPPRWYAIPVRVLLVTFIGTLLSFAMSLLLGIIGTVIVSARRGVHPNMTVAYRLIALPAAVVAGSIIFVLALTMEIRHYRQSRTLAAIARLN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182015_10000013

Overview

Ecosystem & Geography

Associated Families

Sequences