Scaffold Ga0182015_10000009

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10000009
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 234625
• Total Scaffold Genes: 204
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 137 (67.16%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000515	Metagenome / Metatranscriptome	1062	Y
F000655	Metagenome / Metatranscriptome	958	Y
F000822	Metagenome / Metatranscriptome	876	Y
F003988	Metagenome / Metatranscriptome	458	Y
F010410	Metagenome / Metatranscriptome	304	Y
F034635	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_10000009133	F000515	N/A	MTHFPQPHPSRRAARVQLGSVLAAIRLEDGRRTKAKLQTISVTGGLLQLPCSLGNGAFVELAFQTQSGPVHGMAEILSPLRKTTTGVLQPFRFIALEDDDHRRLRTSLDQVVDRSLLGLKSSAFTVPRTI*
Ga0182015_10000009149	F034635	AGGAG	LTAVRLLILALLLASRLAAQNMDSDKIAADALPAAPVPMTTATPLQRKPEKVFDKKFFAVMGSLAAAESLRFTTRMLVLDREYAAGAPWVTSVPANQQIIAKDFGLYSSEFLVAYELKKSHSWLPGDRIIRRLWWAYPVAMTAIHVKNAVGNIRTQGPGGCTSVECAMQMQ*
Ga0182015_10000009169	F010410	AGG	MLLIPAAFADDAVDKTAVDKNKDQQAYCRYLTEQAAAQRDLLITPNAVAGITQPNTGLPMQAVWGVSGSLSGVRKGVLTMDAARKNCDLYTAATSTQQDIQYALPNLEKQALQHRLELIQQASENLDALLANTSKMVSAENMTRPMAFALQTSKIKLDADRADTQSKVVSLYTPQLSDRPLKELVADKQSREVNGQKALDKLNRQNDWDVALSVGEHQQINPWVDNRGAYGEVSISYNLASHAINKHLDQAADAYDDWKKVQEGDVVRNADILKQQVVDGISVQDSRLKALQEEQKQIESNLQLVTRADTTAALDFRNQLTTAQLLLNIEIGDATFRLDRLREFLLRNF*
Ga0182015_10000009182	F000822	AGGAG	MNRTASWCAAGILAMTSVAYGQSPHVYHGEVSDSQCALNVHSLTRSHQEMLKSKSMGGTSNTCSVYCIEHLGGYLVLSSGNDVFRLDRADLVHGYEGQKVKLTGILDAKAKQIHVLKIELEDQK*
Ga0182015_10000009195	F000655	N/A	MIWWFLILGVSTLVVVCVAIALYMRLRRHLQAAHAAQDGTSSEVEREQSGRQ*
Ga0182015_1000000957	F000036	GGCGG	MDYKETFWMACDSTEQLRAEYGPFHTRAEAEAEARKLGFSYLLRYEHMLDENEEIQEVRCIFIELPGAVLAEASSISLHTRCATCGESATHDKAWQAEVWADIHEFEHSRHRVRLFEHSRGKGLKEIGGWRA*
Ga0182015_1000000995	F003988	N/A	MARVKGGMRFTCSHCAHHVSTLDFDPRDGNLRTQAATAINRHATSVHHEPVMFSSLDTQQRIWRT*