Scaffold Ga0182017_10073360

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182017_10073360

Scaffold Ga0182017_10073360

Overview

Basic Information
Taxon OID	3300014494 Open in IMG/M
Scaffold ID	Ga0182017_10073360 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2258
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032201	Metagenome	180	Y
F032300	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182017_100733601	F032201	N/A	MITVFTPSFADEANTNAQNLTAKEIVSRLPADRFRVVLLGDGPPDPRILARQNTEILRWSRHGNTARWLTRVLLSKVDIYFFPRQGPLDTLFLFFRRSLGLPIALVTYIVMALDEIDIGPTMTRSIREADCVVGNSRYVTQTVKER
Ga0182017_100733602	F032300	N/A	DDFLSSWTRQHWDSVIDLGRAPKSFYDEWSAALGCPVFSVFDLAIEVEDLQIWRPLLQLGMGRVVDRFGIDWWDVISLMLQPELQDVQLALRLAEKLKVCRTLVASRPSATAEALRLQLGIPLQVMHRGLRKRLVRSVLRRGAAVANLSFEQLRQVVYDKYDPHYRWRRKLAGAPTQLSASKSKSKSKSESEPVVLLPSAYSNVTKTALSYAEILPEKKFLLVLARESGAVSPLPSNVETASLAGFATKSYDRNELQKLEADWKQMAQSLAEHPAFRLPARLGILKKGPRWLRWGLTVRDAWIRVLETRPVVGCLSADDSNPYTRIPLLLAEQRGIPAVACHHGALDCRMAYKNLRFSNYLAKGEMERDYLERICGVDAGRIRIGAALFPPRENTSVWNERAPWITFFTEPYETDLWRVEAIYREVLPRLCAAARGSGKTVVLKLHPFESARQRLRLVKDVLSEVDRKLVNVTDAPLSLEIFQQTWCAVTVESTAAFECASVGIPAFLCGWLRHVYAGYAPQYMRFGVGRMLEFPDDLLRIPDMLRAVMPDSDTARRLVQAISPEALSEVLCQPQASGLRSAF*

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