Scaffold Ga0182017_10000212

Overview

Basic Information

• Taxon OID: 3300014494
• Scaffold ID: Ga0182017_10000212
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45695
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (73.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011165	Metagenome / Metatranscriptome	294	Y
F031402	Metagenome / Metatranscriptome	182	Y
F054768	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182017_1000021222	F054768	GGA	VRAGQTGGAEIQRFFLAKPGGSHGVPEFSKEFPGEAEAMVESLKTGLSYFVVSEWRGIADFSGKKPQLGREAVRNAPKAG*
Ga0182017_1000021228	F031402	AGGA	MKLADIPPGSELAYRCAAKQIAEQVEFELETCRQLYGTEPEKVLELLANTPDWTVFLEDEDQ*
Ga0182017_100002123	F011165	GAG	MQVPWDRFHKAYEEYIRWQAFALWARAIVELEGSTPSWLKAIQRKRCPGFVEEAARSNEPGLLGLQLLPWVHNQAFGLAKQEGWLDALVFYGFRDTRSQGYWTYWEHCKSEWKKRPPASVPTFAQWRRSALNWKLHGDVSCTAVTKAVEKYIDFEAFVYWLRPLFQTAKIQLPANVTLELGREYPSLLEFVNREVSAAYEDKSRRWQRLFSWGKDHVLSHAKKEGWLDLVLRQARIHPRHVRMSDYARLWGGSRAENPPSPHPSFGEWRKEAESYVRTSRK*