Scaffold Ga0182017_10000018

Overview

Basic Information

• Taxon OID: 3300014494
• Scaffold ID: Ga0182017_10000018
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110744
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002531	Metagenome / Metatranscriptome	551	Y
F069602	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182017_1000001839	F002531	AGAAGG	MASAIASEGTLRIHRSIAGTSAPFRVTFQAYQDGDEPAPAAERSFYHLQEVRQFLHVLGLTAEYIRDALRELTAGRSAFLTNIALTEKAIKNAGFGSLVTVAKG*
Ga0182017_1000001870	F069602	N/A	LGILTLAYDAHLNEAAAFPGLSVFEGEDVSTEAEGRLGVRVGRATVLLAGSSGASLHGIDSGAHVDLTAGTVSFSSPENGIVEIHAEEAFLRPEKNQLTQAEVTILAPGVLQVRARRGDLAFRYREEFQVLPEGATYRIYLDSPAEPKDPAGSGAQKSTRLRKVSYFVVGTAGAGLTAWGIYEFTHSGSGIESPTKP*