Scaffold Ga0182016_10218930

Overview

Basic Information

• Taxon OID: 3300014493
• Scaffold ID: Ga0182016_10218930
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1215
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003764	Metagenome	469	Y
F038518	Metagenome	165	N
F059572	Metagenome	133	N
F075559	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_102189301	F075559	GAG	MENLREVNPARLAWGTYDHEKNDYLSKGDIPASYSGDSIAMEQPVRKPFRMDGEMWVAIGLSNHG
Ga0182016_102189302	F003764	GAG	MRIEEDSIYALDENPAALLAGAEIDAAAIYRCLKIVRLWSQSSALSRSRRDEMIEEEQRLTNLYSATLLEIGCAFGRRAADELKVRIEAACILDPRECPPAEQGLLFPILGNPETAASPAKARK*
Ga0182016_102189303	F038518	GGA	MRFGMLDPDEQPADRLGSYPVKVMRWIRHLIFTLHAERRDVQAGIAELEPKVAALSQIIGDAIK*
Ga0182016_102189304	F059572	N/A	MTAMQFSLFNAQPQVATVDTEPSVNARNAKRQLDTLRRQLATAQADLEDVNYNLSIVTMHQRASREGKIDAN*