Scaffold Ga0182016_10115873

Overview

Basic Information

• Taxon OID: 3300014493
• Scaffold ID: Ga0182016_10115873
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1865
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → unclassified Methyloversatilis → Methyloversatilis sp. XJ19-13 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002448	Metagenome / Metatranscriptome	558	Y
F098291	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_101158731	F098291	N/A	ESGALANFEEISVNPPDLPNPPVKGDWVTAWGAQYTVTTVRQPDAYGMIALALLQRAG*
Ga0182016_101158733	F002448	N/A	VINPKTILGEWVTTLRTLPNLVAAIGDGNRIQYYTENATVFGQQTENNIRLAILSMPPGSILIAWQGTRPGRLGSALVFVHEFSLYLRAPESASVGYEDIFNWLVNDVPSSGSLSMLHTPVDANCEPMDFYLPSAQRNTVVISADGATFEYFEVRANLIESQNP*