Scaffold Ga0182016_10054698

Overview

Basic Information

• Taxon OID: 3300014493
• Scaffold ID: Ga0182016_10054698
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3076
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041546	Metagenome	159	N
F050107	Metagenome	145	N
F050108	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_100546981	F041546	N/A	VPDDDNFNIRTEVNDLAIRYAKLPDGLEKEAAFLTLVECFHGYLIKYTNMVIRGQLPNPKSRVGKDAAEMLKKLLPRGSHIDQAVLSKTCHTLHLAFKTMTTDDIYD
Ga0182016_100546982	F050108	GAGG	MATLAIDQMQFPFMPPPAPLPTELHNLKHNALQLGQLGNTVRRGSKWANVPKGHVIDLTEGPDHKYMGAGRVVKVWTGPFNEVPAVVLDRNHSGSQSYSSVLAAMRNAYGAEFTEDEIVVFLDYTRIN*
Ga0182016_100546986	F050107	GAGG	MAGLWFKPVCDDLLGKIHRWWVNYERGEIYSTREWLDREGNKVDKPTRYAYRTPFRPLEIQHLVSILETLAPANSLTKDMKELHESMKRRFNNLPLKNRPRLLATGEWVVTLAWYKADIEEVLTLLLEAKSGKSQTVESLAEQQKAQGKELFEV*