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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014493 Open in IMG/M |
| Scaffold ID | Ga0182016_10003990 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16553 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (47.06%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000688 | Metagenome / Metatranscriptome | 937 | Y |
| F001371 | Metagenome / Metatranscriptome | 712 | Y |
| F008094 | Metagenome / Metatranscriptome | 339 | Y |
| F089205 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182016_1000399010 | F000688 | N/A | MTHFPQSNVSRRSPRVKLNGSVAAAVMAEGGQRSRAKLQSISITGGMLQLQHELSAGDFVEIAFHTRAGAICGMAEMLHPTRKFQSACLQPFRFIALGDDDHRKLRMAVDSAMDRSFLDPVSEKLQTPPGF* |
| Ga0182016_1000399013 | F008094 | N/A | MRRALLQSPLKEAPMKTIARRCGLNFLVLLSSVSTCVPALLAQTNPPPFDPREMVTRQPHTLTRQSDRSAALDLLDRARQNFNLYDIKTPYTLKASFETSGTAQYEGDWTMEEYSDGGSHWRWSAQLRDLKVTRIGVDDRVYGNNASEPIPLRVQLVRSALHSPFARHAGGMAIRAADVDRDGKEMDCLLLSGAIPPNPAPRSWYESEYCIDHANALLRMWSEAPGIYAVYDYTGATPFHGHTLPRQITIFEDGNLVVQARVESLEDKVNLDANLFKPAPDMENAEESFTLASPNRLPMRVDPSDAPTSTYFQPVIIHAILDAQDGTVLDAESLQNSDHDLSRQAIDLVKSTSFPASGFQQEVFINVQFHFPAARYGGPPMFHTPVRWVILDHHGPPLRRKPRSGPRAIAEPSARTPATLPD* |
| Ga0182016_100039903 | F089205 | GAGG | MLETRLYVEYPSCGMQYLRKDFGLTYSNGAYIENLAGCPDWQRLVCPCQPKKPYRFKLSERTRLHVFRADEGERPISRSRH* |
| Ga0182016_100039906 | F001371 | N/A | MALKTETNVKKAAEADLQVGLICADRDGNRIRLDRLDRDSQTLSYHFLNDELRVQEGIQDRSISQFLAEGWYVAAPGKSL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |