Scaffold Ga0182016_10001416

Overview

Basic Information

• Taxon OID: 3300014493
• Scaffold ID: Ga0182016_10001416
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29216
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_1000141620	F003389	GGA	MQITVWSVAADDNNGTYASVHETESAAYRRLIQLTVDSDNKNDVAKAEAFMEAEDFDGLDEWIHEEVIEALNTYSVEQHTLDVSACPSPAPTANERALSRRELASALHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLGPNEIDDLCEKLNMEFCT*
Ga0182016_1000141621	F003942	GGAG	MLGHRLNPTIHRYEDVELIEVHSEYLECRFLVAKDEWETGKTLLTIFSPLDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHAIYADHLSAMLYGNGLNPARS*
Ga0182016_1000141623	F003764	GAG	MQIQDDSPYLLDENPAALLAGAEIEAANLSRCLKIVRLWSQSSALPKSRHDEMAEEEQRLAHLYAAILFEIGSAFGLRAADELKVRIEAACILAPWECPPAEQGLLFPIPNGPATAASPATPGK*
Ga0182016_1000141624	F004301	N/A	MEPSVNARNAKRQLDTLRSQLATAQVDLEDVNYNLSIVTMHQRASREGKIDANWWDAAMRFEMLDPGEEPVYRLGSYPVKVMRWIRHLLFTLNAERRDVLSAIADLEPKVAALSQIIGSAIQ*