Scaffold Ga0182016_10000050

Overview

Basic Information

• Taxon OID: 3300014493
• Scaffold ID: Ga0182016_10000050
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 126748
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (50.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006517	Metagenome / Metatranscriptome	371	Y
F016551	Metagenome / Metatranscriptome	246	Y
F023386	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182016_1000005010	F016551	AGGA	MSIEEVSPERFAQLFHHYHQALASEPEHPCHLRTKDEWERVPALEKNRLIAATRLALLEVEVVPGGPPPRRYFAKPGEAEWGC*
Ga0182016_1000005045	F023386	GGA	MSGCSKPPQPVPVEETAKPTGLESIPAPDPLKYPRISDMANWRNPYLVVREDGIGMVDLSNHEIHMLKPEEVPAELVSLSPAAWPYGRVVLIAQAIPKDASEQTKMSLRKNRALLIGTLKELDVQYREAP*
Ga0182016_1000005062	F006517	AGG	MLPRIDYSVTVPVSVDAAFRAFQDFERLLHRGIYTEAAWIQGEPWQVGSRVRYVVSHPVEATISAVVTSISAPRAVFLLNHALGVTAEQHVSFGPDLNGGTRIRMMMNLIGTSTELSESAVHDAVTFITRDALDTVVALCRRSASSATG*