Scaffold Ga0182013_10152277

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182013_10152277

Scaffold Ga0182013_10152277

Overview

Basic Information
Taxon OID	3300014492 Open in IMG/M
Scaffold ID	Ga0182013_10152277 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1457
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002448	Metagenome / Metatranscriptome	558	Y
F046491	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_101522771	F002448	N/A	MISPKIILAEWVASLQTLPNLVEAIGGDPTTIQYYSENTTVFGQATQANVRLAVLGMPPGSIMVVWQGTDRGRLGNALVFVHEFSLYLRAPETGTAGYEDLFNLIVNDTPAGGALKMLHLQVDPGCEPMDFYLPSARRNTIVISADGATFEYFEVA
Ga0182013_101522772	F046491	N/A	MQNAFGEPVVYQSMQAGLAVGAPATIVVVRRIRERMEAGAVASVEEIELNPVDLPIPVQRGDIVAAWGAAFSVTTVRQPDPYGMVHVTLTLQPS*

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