Scaffold Ga0182013_10028945

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10028945
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4696
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Labrenzia → unclassified Labrenzia → Labrenzia sp. DG1229 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034435	Metagenome	174	Y
F065349	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_100289452	F065349	GGAG	MTAPLTPVPITKTQRLREFIAAGDWPRALSLANTFRHLGPHRDTIRLAHECRVHPRFYRGLGRDPEAVTAAGIAALQQLYPERQDK*
Ga0182013_100289453	F034435	N/A	MSSRASVTLAAAVVLKPETFEDDNGNTIRVWKSSEMSSYSNSDIASTLVNRVAVEPNEMLGTVPPSAIKYCVTKGWLIPNADKTLYRITLKGAIDLDLPLYFKGKFNGRKIPFAAAPSASASK*