Scaffold Ga0182013_10028871

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10028871
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4707
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_1002887111	F003764	GAG	MQIQEDSTYVLDENPAALLTGAEIDAAALHRCLKIVRLWSQSSVLPRSRHDEMIAEERRIAKLYAATLFEIGCAFGIETADELKVRIEAACILDPWECPPAEQGLLFPIPRDSANAASPARARK*
Ga0182013_100288718	F003389	AGG	MQITVWSVAADDDNGTYASVHETELAAYRRLIELTVDSDAKDQVAKAEAFIEAEDFDGLDEWIHEEVIEPLNTYSVDQHKLDIPAASDPAPAVENKPITRRELASVLHGLRLMQEQWEPQMHGCTSIGLHDPQELSEPNSCDHFCDEEDSPLSSGAIDELCDRLNAGFRN*
Ga0182013_100288719	F003942	GGAG	MLGRRLNPTIHRYEDVELIEVHSEYLECRFLVAKDEWETGKTLLNLFSPLDGNVLGFPHYLLHRDNISAVGPKLPDGTTAQPGMAEAIELQRQAGHSLYADHLSAMLYGTGPNPARS*