Scaffold Ga0182013_10022751

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10022751
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5572
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018966	Metagenome / Metatranscriptome	232	Y
F043254	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_100227512	F018966	AGGA	LDSKAHLARHFRRHVGAQLYDGSGCEPRGTAIYSLSDPRDIRDIRYVGQSSAPKRRFLQHLNTARLWMPDETPWWVKAPKMRPLSAWIRDLYNDGYRLPVMVIGAWVDTASEARVAERARIYECLERRLRLLNVETEILGRQMPLV*
Ga0182013_100227514	F043254	AGGAG	MGKESGSNHGEGNPEAAERFNKAERSFVDSARGKEKIREGTHVSPAEEANLAKAEQVGRDHAKNDDSKSASILKNQQNVRNK*