Scaffold Ga0182013_10001458

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10001458
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32563
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002860	Metagenome / Metatranscriptome	525	Y
F009018	Metagenome / Metatranscriptome	324	Y
F047259	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_1000145811	F009018	GGAGG	MTIHIRRFIATGLAIASFALATSAAMAQSYTGNWQVTVTQSQRSNGTYCVALTDNGSYGWPHSGEASLIPNNSQYPGYFTVIDGLMTVTFTYPSGEGDCCDFFVLTARASNGRIGKGAFNYLGLTDNGFVAFGKKDGC*
Ga0182013_100014583	F002860	GGAG	MPTSNDSKPGQNSAQAAEQVASAHKILKELQQKVGNHPELGEAITKLEMALNTLAVKTGGLL*
Ga0182013_100014589	F047259	GAG	MKCTAAPFFGSDIGDGLRKVPAVAAKILSVVLALAIGLVLGFRQYDGTVLARSLAVTLSIFDANLNEVRVVGYRVAFGDSEAAISSFHLDAVVGDAQTDGEAKSL*