Scaffold Ga0182013_10000037

Overview

Basic Information

• Taxon OID: 3300014492
• Scaffold ID: Ga0182013_10000037
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 138657
• Total Scaffold Genes: 134
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (66.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000281	Metagenome / Metatranscriptome	1382	Y
F001289	Metagenome / Metatranscriptome	730	Y
F005676	Metagenome / Metatranscriptome	393	Y
F046612	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_10000037115	F000281	N/A	MPQSVKERVGKLRAEIAEISEANRQYLQGGKKAIGASDQERRLQRLQEIMDELMSLTEWKKT*
Ga0182013_1000003724	F046612	GAG	MNAIDTSLPELSKLIEQRLALVRSLAESLESSSLALARNDAEAIARGAAHQAELCRQWSHLEPELRSQAGSRSPAEAGGSARLQAQWEALGVRIRHVTRVHWSLLRHLERSLAIMHRLVDSCAPTYRPNLGLLQTTVKSEFHPRTGE*
Ga0182013_1000003727	F005676	N/A	MTMPMLIPLDAVVTLRQVNENLRAALLRLRPERTRCSSITPHDFSGILRQLLRAAECLRRPSANSDAAAALQQQALEYRGNLEKLRRFLPDVHLRLLAEKARLETARARLATAAEWAQARKTTL*
Ga0182013_1000003794	F001289	GAGG	MKNPYDVLRMKEQELMRVRKEMDALRIAVRLLAAEDPGGANGQSQPKLHQVVELP*