Scaffold Ga0182014_10183615

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10183615
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1145
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004581	Metagenome	432	Y
F038945	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_101836152	F004581	AGGAGG	MKQADIYNGHAGRFYRMAEHIELSMTPQHHQKHGGPDPITTNDITLATTLMNSVYGYPAGKQAVLALSAGMIPGEERSQTVRGLFMMTAGCSEYDQTVTYTILPLPGREIETASLLKATAAYSLERAEAHSRTIPLLTRQPAQLER*
Ga0182014_101836153	F038945	N/A	TSFDKDVFAASKKAALREFSALAASVENGGSATKEFNYTFALCIERPPNGAPNQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRATRTKTTQELDR*