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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014491 Open in IMG/M |
| Scaffold ID | Ga0182014_10073033 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2195 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002761 | Metagenome / Metatranscriptome | 531 | Y |
| F005112 | Metagenome / Metatranscriptome | 411 | Y |
| F010071 | Metagenome / Metatranscriptome | 308 | Y |
| F025427 | Metagenome / Metatranscriptome | 201 | Y |
| F039911 | Metagenome / Metatranscriptome | 162 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182014_100730331 | F025427 | N/A | MEELLASLGTCPIQKKGLSWRLFKLYWKKLLFIALMLVLPGGLIVLFLCITAWALNWEREMTAYMDETYKK* |
| Ga0182014_100730332 | F002761 | AGGAGG | MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRESALRWINSHKVIALTTTEVVNYSVHGVSSPLGVTFALGGTIVNVLMVAFVVPIWCRLSRLESRLS* |
| Ga0182014_100730333 | F039911 | AGGAG | MKYTIAVVLAVVAAVAGYFGIRCLTHKDLGFTPVKRYAAKLAKTLLHTEATAAQEAGAAPAA* |
| Ga0182014_100730335 | F005112 | AGGAG | MSLAVKYKLFWAGCIAALCGLAFWKNSKSYPGKSKLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVLGVFAVDLLTGQVVARMDRRNRKDVAKAA* |
| Ga0182014_100730336 | F010071 | GAGG | MNRLANLALSVGETLFHEAGRLLFGIALGRAKELLGTPQPVGTRQLALNRALQKKAVDGALLAGPRTGKEYAKFTLKKGLPTDQRPRTLAVENEPHSVDDFNGVIKEGYGKGEKRLIYSGTGVIKVGGSSQLGKINVHEHDAEKAGFHYDFVAKGVDPHTESFEVNIANGVLKGRYAFRQAFEENRYLVVRLKDNSVLVAKPDIHLKPPELLSSRTDSTRPVSVEWKDDGSH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |