Scaffold Ga0182014_10040617

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10040617
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3376
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017708	Metagenome	239	Y
F036885	Metagenome	169	Y
F046588	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_100406173	F017708	AGGAG	MARVIEFYIPKNFRKPLRAEAQPQFGKIIEFCPQTKRSA*
Ga0182014_100406174	F046588	GAG	MTYIPTQAGFMRLEDSETLLRVIFPNYPSLEPCHSAPRLEPIPQGSKDYRNEERMSLC*
Ga0182014_100406176	F036885	GGGGG	MSKKKDRERVIAEITLSHLMRLENKEGCPVSREQALAFLNQEGQAFEMWKHMMQAAENFIACSLLRHSLSPRGHHGFAPQSSLLRSISTAAR*