Scaffold Ga0182014

Basic Information
Taxon OID	3300014491 Open in IMG/M
Scaffold ID	Ga0182014_10027427 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014491 Open in IMG/M

Scaffold ID

Ga0182014_10027427 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4519
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4519

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000585	Metagenome / Metatranscriptome	1007	Y
F015956	Metagenome / Metatranscriptome	250	Y
F080763	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_100274273	F000585	GGAG	MKLISKERAAEVALGRRSQKVAEDESRLVARDLLDETITEFLEWRAFSYWLRLCVETAGSVSDSLAAILQERCPGFLEYATAYAGQHPSEREFLWLRFLEWTDEKLFQTPIAEGWRHALGYYAMRDPRMDQLRAHWKQSRRAWKLQPPAVLPSFEKWRASAFPTH*
Ga0182014_100274274	F080763	N/A	MRAKPGPQICAVWTRDSAVVLLDGIEPDEHGKGLAEARLRALHPLPEGKIRHSTDFEKRLRKIFEKQIGDREQPWLTLEFWQMEIDNVLVQGIFGRSGTKSGSVDRIHAVWPKLTVAWLRDRMEEVARASLPRWVQNEFWATEVDPILLVGLDRATRFRREAVDKVLRACTGLQIGTVWARLRVLRNLRNREPEGLSFADLGESSCVAREGGSAAKETSSSAGYSNDRWVWKSVAP*
Ga0182014_100274278	F015956	N/A	MPIQRYQRSGDLIDRVRQQTERRALEQAKRVPWERLAEAAEEYTDWQVFTLWLRAVVESAGSIPPMVEQEIDSRTPRLLGRVRRGVEAAVKNGDSAGARIWQDVSRRVEIDSFVGAKRAGWLDAARYYSSMSVRSMKAWSHWENTDKQWRAAPPKYFPNYARWQSEVADVAKLSNPDSTAQQVLDAVRGISDAEWSKLLNDFSCLITFALWMELVLDIEGPTSALVSKELANRYSGFSLSLAIGSKAVVRALNDWALDHALAIADQKQMLAALSFHVSHH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182014_10027427

Overview

Ecosystem & Geography

Associated Families

Sequences