Scaffold Ga0182014_10027131

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10027131
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4558
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F098489	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_100271311	F098489	N/A	DDRKARIRGAFLERLLDPDAMTLTPDQANILRALNRDGAIADLGDALQGNVSLQPGEYSLAGEHRKTFEKQIDEINKGLYDALFANTIARHVEIEPLLGGVAGGETDRSTAFDRGENKAFSKNEVF*
Ga0182014_100271312	F008672	N/A	MWQSYYNAGLSKQIVRQLLAIVSRDIQAALDFVSGVPGSYAPFAEYDLALLPVEQYPAILLTPDKVTFDEEAGSTLHQTMRLTCVIAVTHQDRNTLAEMTQDYVRAVRAVLDTLWESTPGDSLLTNLPLPSPPFPDGALSPGLASGKLMKIFLDGHTFEEIRRSPQSGFAMAATMSIIVEIEEN*
Ga0182014_100271314	F010661	GAGG	MVKSNGIATASEFRKLAEDGAFEEPRRVVLPKSGYVVLLRRPTNFYWALRRSVWPPELREKLDLVALGVRPDLTAEETLLLVREDQQMRNEAFVDPKPSLNPGSMQFDPNWLPKEDAEFILKYLRGQVLANGQDLETFPRGEPGHPEGSGADGALVREDPQRDVIPRGGALAS*