Scaffold Ga0182014

Basic Information
Taxon OID	3300014491 Open in IMG/M
Scaffold ID	Ga0182014_10022897 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014491 Open in IMG/M

Scaffold ID

Ga0182014_10022897 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5175
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5175

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F017708	Metagenome	239	Y
F017965	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_1002289710	F001596	AGGAG	MSWFHSSTAAAVVARNYASPAEIVGCFQDQRNVLSRLALLITGDQATADQAVVHACKITLQGNSPFRDWLLEWTKAATIASAISHGMEAIRICEATYTDRRCQHAEHLSQGDAEERAASLDLILETDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHAMTWLHAGPVKSVEENHDASHAV*
Ga0182014_100228972	F004823	AGGAG	MYVTKAVNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGQQSEFLLNEQDWEWIRAIDSPFRRAAQHA*
Ga0182014_100228974	F017708	AGGAG	MAKVIEFCIPKNFRKPLRAEAQPQLGKIIEFCPQTKRSA*
Ga0182014_100228977	F017965	GAGG	MDSKPNSGIALTDMSEKIGHRDASYLFACHLEWITKRNLAAYQELLAALDDHDGDIRRLAESLLHRSTPRPKRTATGIESW*
Ga0182014_100228978	F006399	GGA	MATPALNSRVQSLVTEYGVFWQFWPQFEQTDGERRLVGFEVELIGSHRSDLNHVDPACPICRHVRSVLLAIADLMPGELTFSRNYLTYNIDSHSNSIVWLPALGNRSAVWVSIYVFLNRANGQSFETDLLKEVKTFLNRWGIHQR*
Ga0182014_100228979	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPEGLIVDLTEVSYIDSVGEQLLKWLASVGALFVAGSVYAIAVCDRLHLSPMQRISERRKRRHGNNEERFSITHSHPVEAI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182014_10022897

Overview

Ecosystem & Geography

Associated Families

Sequences