Scaffold Ga0182014_10007000

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10007000
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11933
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005676	Metagenome / Metatranscriptome	393	Y
F046612	Metagenome / Metatranscriptome	151	Y
F063625	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_100070002	F063625	GGAG	MEPLITNGIDPALLRVLEKRGGERDPAPRRKRPAVPEKTVEEEELDQEPGPDAPKHAVDDLA*
Ga0182014_100070003	F046612	GAG	MDDVDTSLPQLSKLIERRLALVRCLAESLESSTPALVRNDAEAIARGAAHQAELCRQWGRLEDELRREAGRRSAPPPAGASGNFPGAEHSARLQAEWEALGARIRYLTRVHWSLLRHLERSLAVLNRVVDSCAPTYTPDPGRFKTEVRLRAGE*
Ga0182014_100070006	F005676	GGA	MMPMPPDALESLRQVNDNLRSALLRLRPERKRCSSITPQDFSDILSQLLRAAECLRRPPAHSEAAAALEKESLEYRTNLEKLKHFLPDVHVRLLAEKSRLETARAHVAAAAAWARSRKKTL*