Scaffold Ga0182014_10005316

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10005316
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14349
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011008	Metagenome / Metatranscriptome	296	Y
F015327	Metagenome / Metatranscriptome	255	Y
F015623	Metagenome / Metatranscriptome	253	Y
F028442	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_1000531610	F015623	GAGG	MQQKLITVTLEPDGTSKIDLEGFTDNTCGKVMDDFRGGDLVLTERRKPEHYNRGHGHQCQQGNQ*
Ga0182014_1000531612	F015327	GGAGG	MEPNALVECANELMRALKEELAERGTVSPAFILLHERDCEVLTFSPCLFESAEGRAAVARAFRNRALQTEAHGTLIGMDSNCFIPDLTALREANPRLVQAAAGAGIDALVRSGFGRKSEGLSITLQTPAFHLLVQQLYRRGDNSIVFDELRTFDSREVPMEAAGLFNIYGGQHVTRG*
Ga0182014_1000531620	F028442	AGGAGG	MTVEEALTDIDRLGRGGLTTPRVAQQEVSCHDTQQAVRLLAEAYGHLRKRDALYADQRRCASPAPPPASVPPD*
Ga0182014_100053164	F011008	GGAG	MKRAKAATLLVCLFVVYCVLLSQGLKASAASAFFGALAAVPLTVHIYRRLWPLPIERDGGERGLHRHARRDAAEAAFAPGKVDARIGQSD*