Basic Information | |
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Taxon OID | 3300014491 Open in IMG/M |
Scaffold ID | Ga0182014_10001215 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34770 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (48.39%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001772 | Metagenome / Metatranscriptome | 637 | Y |
F009102 | Metagenome / Metatranscriptome | 323 | Y |
F029572 | Metagenome / Metatranscriptome | 188 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182014_1000121517 | F029572 | GAG | MEKRRLRVLKWLGTIPAVAVCTLCNREFKVPVAAIKKAAAAQESLKLQFDQHPCKQE* |
Ga0182014_1000121525 | F009102 | GGA | MNYLYAAYIATWAIHIGYLSSLVRRYTRLRNEVAELKTRVEEK* |
Ga0182014_100012153 | F001772 | AGG | MRKRILLVVGSALLLVAGYLAGNRRATVAYAGPPVQASVPKSYGRLVAAIPDQVGTGLVFEDDGGVVRFVAMTGMKEGELARYDQTPTRGGIPKSYGHLVAAVVNPDGTGLVFEDSEGVIRLVTITGKKEAELTRN* |
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