Scaffold Ga0182014_10001035

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10001035
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37768
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003353	Metagenome / Metatranscriptome	492	Y
F004586	Metagenome / Metatranscriptome	432	Y
F010699	Metagenome / Metatranscriptome	300	Y
F049409	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_1000103521	F010699	GGAGG	MQRMASNHTWFKWLMQSKNMTSSLILATALALCSALIAAGGTKPLTADPLTGLPLSPATDSRLHLGNDPTRLPESNVCKSKMQADFYTVYDSKVDATLAWYGVHLPGFKKTHAYAANRSQDTFYNAEGTLSVSVTGSSGRAGENTETYSVVYSLFQPALMEKTIIGLNQQKIVCR*
Ga0182014_100010353	F003353	GGA	MKSTLLLTLLLGSIRVGLAAPIGTYQHGTVVRMHMGDCILMHRAFMNRFGPPQAAAVEERCPEYTLVSDKVVFVIVSKSSNQLVPLAEVIDFRLENKELAVRVDDARKESKFAIKEMTLRSEWELMQEHIEQEPGGPPQPSVDASVTLRSRR*
Ga0182014_1000103533	F004586	AGGAG	MTTNEGNKCAHVPCQCLAQVGDKYCGQSCKEAESKEAEIACECNHGTCPLTA*
Ga0182014_1000103534	F049409	N/A	MTTSLKSVIETLNRDANQLERCAQKLESISPDLSLDLASDTELINQKVSSIRKQVESLERWE*