Scaffold Ga0182014_10000045

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10000045
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116056
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (59.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000548	Metagenome / Metatranscriptome	1036	Y
F000677	Metagenome / Metatranscriptome	940	Y
F004589	Metagenome / Metatranscriptome	432	Y
F005961	Metagenome / Metatranscriptome	385	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_1000004524	F000548	GGA	MPKAESQRPRWIGVPVRAFLVTFLLTLLAFAVALLLSILGTIVYSQVEHVAPNLQYAYRHIAFPFAIAVGAIVLVVMLTVEIRNYRQRKALAAIERVT*
Ga0182014_1000004570	F000677	GGAG	MKYLLSVLLLSTAMQAQLLAVTKSALPDAPSQQRSFWTFENNVNVSVLAGLITADAITTQRGLAQGFREANPIMRPFVTRGAAGQAAGSALGFGAGIGVVYLLHRTHHYKAECITMRLMVAGESGFVANNIILIR*
Ga0182014_1000004594	F004589	GAGG	MKKQYLHLSAYSCDKCAGPVVAGSTAVRENEISKETDIRQVGAICLSCGHRQSKATEPGLTRSFPPARWEPAKAFDASLVTTA*
Ga0182014_1000004595	F005961	GAGG	MKVLLYAGLLLVVLGVASLVVPIPHTETEGIKVGSANFGVQTSHSERVSPIISAVLIAGGIALGIAGARSRS*