Scaffold Ga0182014_10000038

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10000038
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 121877
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (65.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002004	Metagenome / Metatranscriptome	605	Y
F003216	Metagenome / Metatranscriptome	500	Y
F094233	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_10000038110	F003216	AGGAG	MTLKNAALLALVGTILMTALLVWNFVFNVLNVFRGVEAPIVLFASFIYAFGCLTVMVFFFVFHRTQS*
Ga0182014_1000003844	F002004	GGA	MKNIPNSSRRLSEHILRALNKIKKPSTANEITELLNRDLDVDDRPFQARDVAEWLRNTEDTALTLYWSRARPRK*
Ga0182014_1000003880	F094233	GAG	MKHALLFIALLCMLSVSLAAENRSLQEGTIVRMRMADCEGLRHSFMASMSGGQMPAESCAEYVLVTDKVVYVIVGKSSDQLVPLAETTRFHFQNSEVVIRVDDARHESHFHVKAMVLRPEWERSQQLEEAEAVALMAAHRLQGAALTGTQR*