Scaffold Ga0182014

Basic Information
Taxon OID	3300014491 Open in IMG/M
Scaffold ID	Ga0182014_10000003 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014491 Open in IMG/M

Scaffold ID

Ga0182014_10000003 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	205948
Total Scaffold Genes	177 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	122 (68.93%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

205948

Total Scaffold Genes

177 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

122 (68.93%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000873	Metagenome / Metatranscriptome	851	Y
F004508	Metagenome / Metatranscriptome	435	Y
F009619	Metagenome / Metatranscriptome	315	Y
F016551	Metagenome / Metatranscriptome	246	Y
F055952	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_10000003124	F000873	AGGGGG	MKDIHEVLRRKQAQYTQLGKQIEMLQEAAEKLREVAPLLAENESEDDTAVLAEVEDDNNTMAAKAGAQSASTAKPGRSATPRWP*
Ga0182014_1000000315	F004508	AGGAG	MRLVRPVLAIAIGIILLSAWAVAGQDQMGVADVYKVTFSEKVRVADTLLPSGNYEIRHVMEGADHIMVFRQVGVKKPAEVRAKCTLVPLPEKALETEKHFELNAANERVLHELIFKGDRSKHVF*
Ga0182014_10000003151	F055952	AGGA	MRGSFLSFSYPSSIMLVGLLVLSTRFLWAQRTLPLENIPIQVLETPAPFARVSEVQTPLHLTYRRLPLTFERNQGQTDSRMKFFPHYPGYYRPPITTNAALYPATRTAESWRKLWGKENYLIVRAPSRWRTFALAYGKIPRETTCCFGDLEHYGHRIPWAGSTILRVLQQAKAHPHVTRVLTVLEPQF*
Ga0182014_1000000375	F009619	AGCAG	LGHRCDQNHITIFNNFAKLHSYMREFSILTNRKRAVVALVHSIIFLLIAFRQMIAATPAAGIWVPATVPTGAWILCGIFTVASAILLWLFAISRGWTEKLYFGMCTVSASSGLLRTTFGDHTFHAGLYIRFVMLISAVLVGLFIVRIHSAAPPIPETPDPVL*
Ga0182014_1000000381	F016551	GGA	MSIQEASAERFAQLFHQYQHALAKDFNGASSVHSTDAWADVPPSGKSLMVAAARLALLEVERLPSERQTRRYFAKPGEAEWGC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182014_10000003

Overview

Ecosystem & Geography

Associated Families

Sequences