Scaffold Ga0182014_10000002

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10000002
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 242732
• Total Scaffold Genes: 264
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 182 (68.94%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F000795	Metagenome / Metatranscriptome	887	Y
F010268	Metagenome / Metatranscriptome	306	Y
F020407	Metagenome / Metatranscriptome	224	Y
F026357	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_10000002157	F000208	N/A	MRIVLRIRVTTRADLYEKRKQEHIERGYRIEDERPIAVNGLRSFIAVRELTASDPVDELVERALNRMAQ*
Ga0182014_10000002186	F020407	AGGAGG	MVKQRFLTHFKPWLFAVTRVVGLIVGYQLFDKTRTYFQYAPLNSVDVVAAATVALLAIGLLCGLWAWGEWCWFKLRRLRRFCSKLKQAFNNRRRPRTVRTSRSVAGTMV*
Ga0182014_10000002187	F010268	GGAG	MATMIASSPDAKTNQIGSRPVGMGGRRTRPAAEEEIVAGARFFLPKSGTNGHAPELGRELPNEGEARVEALKSGVTYYSVQEWRPVADFAGRNPELKREAVPRKGTTTLQAG*
Ga0182014_1000000234	F026357	N/A	LSTSGIFLYSDSAFEPGTKLELVMMLPAELGLGPGGWTMCEASVVRVEESDGKSVGVAARLDRIEVLPELS*
Ga0182014_1000000285	F000795	N/A	MSTQTVELEGFEIELASELYCDRGGDHRELVDRARTDRRRLGHNVDESAVLCVRCMKAIPLKV*