Basic Information | |
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Taxon OID | 3300014490 Open in IMG/M |
Scaffold ID | Ga0182010_10119908 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1334 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Uhrbacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000335 | Metagenome / Metatranscriptome | 1276 | Y |
F022573 | Metagenome / Metatranscriptome | 213 | N |
Protein ID | Family | RBS | Sequence |
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Ga0182010_101199081 | F022573 | N/A | YSEATGQKMPLSATTPYAGSLVEQGGKLYQQASYQDGQAHAYASNIPTLGGIAAGTYPTPGGPNTTGGTGATYLSLSISGNDAANFMTGQFVTPQFVTDQAMAAQYSSYGRTQQSANMQLPGLTVA* |
Ga0182010_101199082 | F000335 | N/A | MPASLCTAFTELREYAQLQNQYHDGTIQRSQLAQTSRRTFRLSKRLSASVLSALYSFWVSQTAGLTPFAFYNPFDVASGQQIGSNYDSTGNNTQGRVTVVFRGNWAQATDIARTNVQALELVEVA* |
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