Scaffold Ga0182010

Basic Information
Taxon OID	3300014490 Open in IMG/M
Scaffold ID	Ga0182010_10006957 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014490 Open in IMG/M

Scaffold ID

Ga0182010_10006957 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5229
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5229

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182010_1000695710	F002761	N/A	MVWAGLGKLNELARFVGFKRSKPRESALRWINSHKVITLTATEVVNYSVHGVSSPLGVTFALGGTIVNVLMVAFVVPIWCRLSKLESRLS*
Ga0182010_1000695713	F005112	AGGAG	MSLAVRYKLFWAACIAALCGLAFWKNSKSYPGKSKLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVLGVFAVDLLTGQVVARMDRRERNKLAKAA*
Ga0182010_100069574	F004817	AGGA	MPKTIAVVKLPEILGNGSSHLVKLAGKIDSFTLLLRETPEGELKRSIEVQFHSMVFATRKEIRKYCPRYRSLPGEGILDFNTDCTSGQLEPGDLGKTPPPKRGRLCETCCFFAGIPEEQVPETTPTQEHPAIPSVQLTLAPAAFDLPRYATT*
Ga0182010_100069576	F003859	AGGAG	MDEQNAEKDTSSERTSIPGRSWPGASLHKSLKLGWRWRRLRWAVVAASEAAQGHEANGVRPGSQEFKTLYNELAKKVEEYSHESGDPMDTLKANLPALCAIERLAHPEPGVSQNRIGLTLGVMLSGVLGSIGIGVLIGLGTGMAHWIAHLFA*
Ga0182010_100069577	F016632	AGGAGG	LTGILELFALVETGSAIGFLANWRNKVLQAKVNYFRQPKSKPSPFDKILRGKVGRAFTRQDRLRLQLADGLVNLIRKLVQYDAFRQVVRGLALAHSPMRKALRKKGERPW*
Ga0182010_100069579	F025427	N/A	MEELLASLGTCPIQKRGLFWRLLKLYWKKLLFIALMLVLPGGLIVLFLCATSWALNWEHEMTAYMDQTYKKWKEEHDVHSE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182010_10006957

Overview

Ecosystem & Geography

Associated Families

Sequences