Scaffold Ga0182018_10177338

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10177338
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1204
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001473	Metagenome / Metatranscriptome	688	Y
F002408	Metagenome / Metatranscriptome	562	Y
F005213	Metagenome / Metatranscriptome	408	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_101773381	F005213	N/A	MEPERDAQEELSGMASSATKMANESEGTGEERQPDVQLQDVLFSALASSVCYWTTIFLLAIVSAYLIQWWLTHPGPYPAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCALQGQRKWKMLMTAAS
Ga0182018_101773382	F001473	GGAG	MESEYQTVGQMYERLRLMIRQRNDTGFRLAVTDAVLEPRNPFEPASKRRPKSVVSITLILVLVLALLFLYFSLHHAT*
Ga0182018_101773383	F002408	N/A	AQMDFAIDYRQPQPQAQVTKPKPPEPVAVVSTVPNEMLLSSTPVRLVGGAAAPKANLGVLIRDVYRRQDEVFVRFSIENRSTQTLRTGAPAVVSLTGLKFDRSLWNFQNAQLGTEYASRLKTYDAPIPVKIRQCEPGVAEVGPGETRIGLIALQLPAVNPDAKKTQPTVLKILFPIDRVGNLTATLVL*